Below is a list of some of the minor clans that where independent or held large estates:
Amako
Anegakori
Asa
iAshikaga Shogunate
Ashina
Bessho
Chosokabe
Hatakeyama
Hattori
Hatano
Hojo
HonmaIkko
IkkiImagawaIto
Jinbo
Kikkawa
Kiso
Kitabatake
Kono
Matsuda
Miyoshi
Mogami
Mori
Murakami
Oda
Ogigayatsu
Otomo
Ouchi
Sagara
Saito
Sakai
Satake
Satomi
Shimazu
Shoni
Sogo
Takeda
Tokugawa
Tsutsui
Usesugi
Urakami
Yamana
Yamanouchi
Amako
Anegakori
Asa
iAshikaga Shogunate
Ashina
Bessho
Chosokabe
Hatakeyama
Hattori
Hatano
Hojo
HonmaIkko
IkkiImagawaIto
Jinbo
Kikkawa
Kiso
Kitabatake
Kono
Matsuda
Miyoshi
Mogami
Mori
Murakami
Oda
Ogigayatsu
Otomo
Ouchi
Sagara
Saito
Sakai
Satake
Satomi
Shimazu
Shoni
Sogo
Takeda
Tokugawa
Tsutsui
Usesugi
Urakami
Yamana
Yamanouchi